BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB003C07SP1|AL425093
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1069 1355 0.0
>3x_Contig1069
Length = 3994
Score = 1355 bits (681), Expect = 0.0
Identities = 713/725 (98%), Gaps = 1/725 (0%)
Strand = Plus / Minus
Query: 180 cacgaagagacaccttaacatgattaamgaagaaatgccttggattaccgtattcaaacc 239
|||||||||||||| |||| || || ||||||||||||||||||||||||||||||||
Sbjct: 1368 cacgaagagacaccggaacaggaggaaagaagaaatgccttggattaccgtattcaaacc 1309
Query: 240 atcagagaaagttgttgggatatacggtgatataggacttggtggaatgatggatggtaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 atcagagaaagttgttgggatatacggtgatataggacttggtggaatgatggatggtaa 1249
Query: 300 tgagatcgtagacaaggtggttatgaagttaggagggtatccagaagacgaaaaccaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 tgagatcgtagacaaggtggttatgaagttaggagggtatccagaagacgaaaaccaaga 1189
Query: 360 ggaaggcgaagaagatgaagacgaagatgacgacgatgaagaagatcgatctgataagam 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 ggaaggcgaagaagatgaagacgaagatgacgacgatgaagaagatcgatctgataagaa 1129
Query: 420 gaacttggatgatgatgatgacgacgatgacgatgatgatgatgatgatgatgacgatga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 gaacttggatgatgatgatgacgacgatgacgatgatgatgatgatgatgatgacgatga 1069
Query: 480 cgatgacgacgacgacgacgatgacgaagaggaagatgatgaagtgaatgacatcgatga 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1068 cgatgacgacgacgacgacgatgacgaagaggaagatgatgaagtgaatgaaatcgatga 1009
Query: 540 agtcaagagtctacacgamaccgtaacatcgccaccatccaccgacgcataacccgccat 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 agtcaagagtctacacgaaaccgtaacatcgccaccatccaccgacgcataacccgccat 949
Query: 600 agtcatcacaacaccaaccttccgattctcatcacaacggtacacaaaagctatacataa 659
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 948 agtcatcacaacaccaaccttccgattctaatcacaacggtacacaaaagctatacataa 889
Query: 660 atgcatacataactatcaccccattgtaacattctaataccagacatacaggtccttccg 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 atgcatacataactatcaccccattgtaacattctaataccagacatacaggtccttccg 829
Query: 720 gtaccgtccatcgtattaaccggttccggcaacccagcagttgtcttactaatctaactt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gtaccgtccatcgtattaaccggttccggcaacccagcagttgtcttactaatctaactt 769
Query: 780 ttggcccgtaagtcacgtgccatgatatactttcttttttttttttttctcttgattact 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttggcccgtaagtcacgtgccatgatatactttcttttttttttttttctcttgattact 709
Query: 840 caggaaatccgaagcttgacatctggaatatatttggaa-racttaatcatctttctatg 898
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 708 caggaaatccgaagcttgacatctggaatatatttggaagaacttaatcatctttctatg 649
Query: 899 agtaa 903
|||||
Sbjct: 648 agtaa 644
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,431
Number of Sequences: 1807
Number of extensions: 18431
Number of successful extensions: 1369
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)